MiModD and Galaxy¶

Work in progress

We apologize, but this section of the User Guide is very incomplete still.

Native support of Galaxy¶

Unlike most other bioinformatics software MiModD was written with Galaxy integration in mind from the start. What this means is that:

you do not rely on third-party wrappers for Galaxy, but they are an integral part of your MiModD download. Every release of MiModD comes with updated Galaxy wrappers that reflect all changes in the command line tools, i.e., you always experience the latest functionality also from Galaxy.
the MiModD tools are designed to be compatible with simple and efficient Galaxy workflows. The Galaxy wrappers do not have to go to great lengths to fit the software into the Galaxy framework - things just work.
even if you do not know how to add tool wrappers to Galaxy, MiModD knows and can do it for you (see here for details on how to integrate a standard installation of MiModD into Galaxy).
if you prefer, you can install MiModD directly from the Galaxy Tool Shed instead.
MiModD respects Galaxy slots settings. Although MiModD provides its own configuration option for multithreading, if you configure Galaxy to assign a specific number of CPU slots to any MiModD tool, the tool will respect that setting leaving Galaxy administrators in full control over system load.

coming soon ..

coming soon ..