Installation Guide

MiModD runs under Linux and OS X / macOS (10.9 - 10.12) with only a minimum of hardware requirements.

There are three different (all of them simple) major ways to obtain MiModD and get it up and running. To decide which of these is right for you, we recommend you to read the section on Choosing an installation type.

If, instead, you are searching for details about a specific installation scheme or about configuration of the installed package you may jump directly to one of these topics:

• Standard Installation
  • Instructions for OS X / macOS (10.9 - 10.12)
  • Instructions for Linux and other platforms
    • MiModD Installation Examples
    • Installation of Required Software
  • Start using MiModD
  • Adding additional functionality
    • Galaxy Installation and Initial Configuration
    • Installation of R and rpy2
    • Installing and Configuring SnpEff
  • Keeping MiModD updated

• Galaxy Toolshed Installation
  • Installation
  • Configuration
  • Enhancing the user experience

• Configuring MiModD for your system
  • Configuration from the command line
    • Configuration wizard
    • Inspect settings
    • Change settings
      • Unset path parameters
  • Configuration through an environment variable
    • Unset paths through the environment variable
    • Passing the environment variable through Galaxy
  • Configuration parameters